IL_7D4I_058
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D4I_058 not in the Motif Atlas
- Geometric match to IL_4LFB_055
- Geometric discrepancy: 0.2259
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.2
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7D4I|1|SA|G|1540
7D4I|1|SA|G|1541
7D4I|1|SA|G|1542
7D4I|1|SA|A|1543
7D4I|1|SA|U|1544
7D4I|1|SA|A|1545
*
7D4I|1|SA|U|1566
7D4I|1|SA|U|1567
7D4I|1|SA|C|1568
7D4I|1|SA|A|1569
7D4I|1|SA|A|1570
7D4I|1|SA|C|1571
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain RH
- Ribosomal RNA small subunit methyltransferase NEP1
- Chain RN
- Nucleolar complex protein 14
- Chain ST
- 40S ribosomal protein S18-A
- Chain SU
- 40S ribosomal protein S19-A
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