IL_7D4I_064

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

7D4I|1|SA|A|1712

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D4I_064 not in the Motif Atlas

Geometric match to IL_5VSU_003

Geometric discrepancy: 0.311

The information below is about IL_5VSU_003

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7D4I|1|SA|U|1688
7D4I|1|SA|A|1689
7D4I|1|SA|G|1690
*
7D4I|1|SA|C|1711
7D4I|1|SA|A|1712
7D4I|1|SA|G|1713

Current chains

Chain SA

18S rRNA

Nearby chains