IL_7D5S_018
3D structure
- PDB id
- 7D5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GC*GCGAUU
- Length
- 8 nucleotides
- Bulged bases
- 7D5S|1|5A|G|259, 7D5S|1|5A|U|261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D5S_018 not in the Motif Atlas
- Geometric match to IL_1R3E_002
- Geometric discrepancy: 0.2968
- The information below is about IL_1R3E_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
7D5S|1|5A|G|250
7D5S|1|5A|C|251
*
7D5S|1|5A|G|257
7D5S|1|5A|C|258
7D5S|1|5A|G|259
7D5S|1|5A|A|260
7D5S|1|5A|U|261
7D5S|1|5A|U|262
Current chains
- Chain 5A
- 5' ETS
Nearby chains
- Chain 3E
- Nucleolar protein 58
- Chain 5D
- U3 small nucleolar RNA-associated protein 11
- Chain RI
- Ribosome biogenesis protein UTP30
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain RW
- Regulator of rDNA transcription protein 14
- Chain SA
- Small subunit ribosomal RNA; SSU rRNA
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