IL_7D5S_022

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUG*CUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D5S_022 not in the Motif Atlas

Geometric match to IL_280D_001

Geometric discrepancy: 0.1192

The information below is about IL_280D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7D5S|1|5A|G|346
7D5S|1|5A|U|347
7D5S|1|5A|U|348
7D5S|1|5A|G|349
*
7D5S|1|5A|C|375
7D5S|1|5A|U|376
7D5S|1|5A|U|377
7D5S|1|5A|C|378

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5C

U3 small nucleolar RNA-associated protein 7

Chain RC

KRR1 small subunit processome component

Chain RQ

U3 small nucleolar RNA-associated protein 14