IL_7D5S_037

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D5S_037 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.2948

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7D5S|1|SA|U|517
7D5S|1|SA|A|518
7D5S|1|SA|C|519
7D5S|1|SA|A|520
*
7D5S|1|SA|U|532
7D5S|1|SA|U|533
7D5S|1|SA|A|534
7D5S|1|SA|A|535

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RJ

Ribosome biogenesis protein BMS1

Chain SK

40S ribosomal protein S9-A