IL_7D5S_057
3D structure
- PDB id
- 7D5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CUUG*CUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D5S_057 not in the Motif Atlas
- Homologous match to IL_4V88_461
- Geometric discrepancy: 0.3649
- The information below is about IL_4V88_461
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
7D5S|1|SA|C|1495
7D5S|1|SA|U|1496
7D5S|1|SA|U|1497
7D5S|1|SA|G|1498
*
7D5S|1|SA|C|1509
7D5S|1|SA|U|1510
7D5S|1|SA|U|1511
7D5S|1|SA|G|1512
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain 5D
- U3 small nucleolar RNA-associated protein 11
- Chain 5E
- U3 small nucleolar RNA-associated protein MPP10
- Chain 5H
- Something about silencing protein 10
- Chain 5J
- rRNA-processing protein FCF2
- Chain RI
- Ribosome biogenesis protein UTP30
- Chain RJ
- Ribosome biogenesis protein BMS1
Coloring options: