IL_7D5S_058

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUAC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D5S_058 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.2437

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7D5S|1|SA|G|1649
7D5S|1|SA|U|1650
7D5S|1|SA|A|1651
7D5S|1|SA|C|1652
*
7D5S|1|SA|G|1748
7D5S|1|SA|A|1749
7D5S|1|SA|A|1750
7D5S|1|SA|C|1751

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5E

U3 small nucleolar RNA-associated protein MPP10

Chain B2

U3 small nucleolar RNA-associated protein 12