IL_7D5S_064

3D structure

PDB id

7D5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D5S_064 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.2522

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7D5S|1|SA|C|1675
7D5S|1|SA|U|1676
7D5S|1|SA|C|1677
7D5S|1|SA|A|1678
*
7D5S|1|SA|U|1723
7D5S|1|SA|U|1724
7D5S|1|SA|U|1725
7D5S|1|SA|G|1726

Current chains

Chain SA

18S rRNA

Nearby chains

Chain B3

U3 small nucleolar RNA-associated protein 13