IL_7D5T_031

3D structure

PDB id

7D5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D5T_031 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.2956

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7D5T|1|SA|G|514
7D5T|1|SA|A|515
7D5T|1|SA|G|516
*
7D5T|1|SA|C|536
7D5T|1|SA|G|537
7D5T|1|SA|A|538
7D5T|1|SA|G|539
7D5T|1|SA|G|540
7D5T|1|SA|A|541
7D5T|1|SA|A|542
7D5T|1|SA|C|543

Current chains

Chain SA

18S rRNA

Nearby chains

Chain 5H

Something about silencing protein 10

Chain RJ

Ribosome biogenesis protein BMS1

Chain SK

40S ribosomal protein S9-A