IL_7D5T_044

3D structure

PDB id

7D5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGGAC*GUUUUC

Length

11 nucleotides

Bulged bases

7D5T|1|SA|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D5T_044 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3869

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7D5T|1|SA|G|866
7D5T|1|SA|G|867
7D5T|1|SA|G|868
7D5T|1|SA|A|869
7D5T|1|SA|C|870
*
7D5T|1|SA|G|957
7D5T|1|SA|U|958
7D5T|1|SA|U|959
7D5T|1|SA|U|960
7D5T|1|SA|U|961
7D5T|1|SA|C|962

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RF

Ribosomal RNA-processing protein 7

Chain SO

40S ribosomal protein S13

Chain Sc

40S ribosomal protein S27-A