IL_7D63_016
3D structure
- PDB id
- 7D63 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.3 Å
Loop
- Sequence
- UAUAAGC*GUGAAA
- Length
- 13 nucleotides
- Bulged bases
- 7D63|1|SA|U|66, 7D63|1|SA|A|68
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D63_016 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.3985
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7D63|1|SA|U|64
7D63|1|SA|A|65
7D63|1|SA|U|66
7D63|1|SA|A|67
7D63|1|SA|A|68
7D63|1|SA|G|69
7D63|1|SA|C|70
*
7D63|1|SA|G|81
7D63|1|SA|U|82
7D63|1|SA|G|83
7D63|1|SA|A|84
7D63|1|SA|A|85
7D63|1|SA|A|86
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain RL
- RNA cytidine acetyltransferase
- Chain RP
- U3 small nucleolar RNA-associated protein 20
- Chain SH
- 40S ribosomal protein S6-A
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