IL_7D63_021
3D structure
- PDB id
- 7D63 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.3 Å
Loop
- Sequence
- UGU*AGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D63_021 not in the Motif Atlas
- Geometric match to IL_4KQ0_004
- Geometric discrepancy: 0.1194
- The information below is about IL_4KQ0_004
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
7D63|1|SA|U|150
7D63|1|SA|G|151
7D63|1|SA|U|152
*
7D63|1|SA|A|162
7D63|1|SA|G|163
7D63|1|SA|A|164
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain RA
- Ribosome biogenesis protein ENP2
- Chain RL
- RNA cytidine acetyltransferase
- Chain SH
- 40S ribosomal protein S6-A
Coloring options: