3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
CCAAU*AG
Length
7 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7D63_030 not in the Motif Atlas
Geometric match to IL_5J7L_018
Geometric discrepancy: 0.1372
The information below is about IL_5J7L_018
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

7D63|1|SA|C|443
7D63|1|SA|C|444
7D63|1|SA|A|445
7D63|1|SA|A|446
7D63|1|SA|U|447
*
7D63|1|SA|A|460
7D63|1|SA|G|461

Current chains

Chain SA
18S rRNA

Nearby chains

Chain RB
U3 small nucleolar ribonucleoprotein protein LCP5
Chain SF
40S ribosomal protein S4-A
Chain SZ
40S ribosomal protein S24-A

Coloring options:


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