3D structure

PDB id
7D63 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.3 Å

Loop

Sequence
UACA*UUAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7D63_034 not in the Motif Atlas
Geometric match to IL_6JDV_001
Geometric discrepancy: 0.2949
The information below is about IL_6JDV_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_71194.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
29

Unit IDs

7D63|1|SA|U|517
7D63|1|SA|A|518
7D63|1|SA|C|519
7D63|1|SA|A|520
*
7D63|1|SA|U|532
7D63|1|SA|U|533
7D63|1|SA|A|534
7D63|1|SA|A|535

Current chains

Chain SA
18S rRNA

Nearby chains

Chain RB
U3 small nucleolar ribonucleoprotein protein LCP5
Chain RJ
Ribosome biogenesis protein BMS1
Chain SK
40S ribosomal protein S9-A
Chain SZ
40S ribosomal protein S24-A

Coloring options:


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