IL_7D63_034
3D structure
- PDB id
- 7D63 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.3 Å
Loop
- Sequence
- UACA*UUAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D63_034 not in the Motif Atlas
- Geometric match to IL_6JDV_001
- Geometric discrepancy: 0.2949
- The information below is about IL_6JDV_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7D63|1|SA|U|517
7D63|1|SA|A|518
7D63|1|SA|C|519
7D63|1|SA|A|520
*
7D63|1|SA|U|532
7D63|1|SA|U|533
7D63|1|SA|A|534
7D63|1|SA|A|535
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain RB
- U3 small nucleolar ribonucleoprotein protein LCP5
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain SK
- 40S ribosomal protein S9-A
- Chain SZ
- 40S ribosomal protein S24-A
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