IL_7D6Z_039

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

7D6Z|1|A|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_039 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.4507

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

7D6Z|1|A|G|1059
7D6Z|1|A|U|1060
7D6Z|1|A|U|1061
7D6Z|1|A|G|1062
*
7D6Z|1|A|C|1076
7D6Z|1|A|A|1077
7D6Z|1|A|U|1078
7D6Z|1|A|C|1079

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain I

50S ribosomal protein L11