IL_7D6Z_068

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7D6Z|1|A|A|1801, 7D6Z|1|A|C|1816, 7D6Z|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_068 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0827

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7D6Z|1|A|U|1798
7D6Z|1|A|G|1799
7D6Z|1|A|C|1800
7D6Z|1|A|A|1801
7D6Z|1|A|A|1802
7D6Z|1|A|A|1803
7D6Z|1|A|C|1804
*
7D6Z|1|A|G|1813
7D6Z|1|A|G|1814
7D6Z|1|A|A|1815
7D6Z|1|A|C|1816
7D6Z|1|A|G|1817
7D6Z|1|A|U|1818
7D6Z|1|A|A|1819
7D6Z|1|A|U|1820
7D6Z|1|A|A|1821

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain f

Small subunit ribosomal RNA; SSU rRNA