IL_7D6Z_097

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7D6Z|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_097 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1201

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7D6Z|1|A|C|2636
7D6Z|1|A|U|2637
7D6Z|1|A|G|2638
7D6Z|1|A|A|2639
7D6Z|1|A|G|2640
*
7D6Z|1|A|C|2774
7D6Z|1|A|G|2775
7D6Z|1|A|A|2776
7D6Z|1|A|G|2777
7D6Z|1|A|A|2778
7D6Z|1|A|U|2779
7D6Z|1|A|G|2780
7D6Z|1|A|A|2781
7D6Z|1|A|G|2782

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13