IL_7D6Z_135
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7D6Z|1|f|A|532, 7D6Z|1|f|U|534, 7D6Z|1|f|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D6Z_135 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2182
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7D6Z|1|f|G|515
7D6Z|1|f|U|516
7D6Z|1|f|G|517
7D6Z|1|f|C|518
7D6Z|1|f|C|519
7D6Z|1|f|A|520
7D6Z|1|f|G|521
*
7D6Z|1|f|C|528
7D6Z|1|f|G|529
7D6Z|1|f|G|530
7D6Z|1|f|U|531
7D6Z|1|f|A|532
7D6Z|1|f|A|533
7D6Z|1|f|U|534
7D6Z|1|f|A|535
7D6Z|1|f|C|536
Current chains
- Chain f
- 16S ribosomal rRNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain j
- 30S ribosomal protein S3
- Chain k
- 30S ribosomal protein S4
- Chain s
- 30S ribosomal protein S12
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