IL_7D6Z_172
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D6Z_172 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.1096
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7D6Z|1|f|A|1430
7D6Z|1|f|A|1431
7D6Z|1|f|G|1432
7D6Z|1|f|A|1433
7D6Z|1|f|A|1434
7D6Z|1|f|G|1435
*
7D6Z|1|f|C|1466
7D6Z|1|f|C|1467
7D6Z|1|f|A|1468
7D6Z|1|f|C|1469
7D6Z|1|f|U|1470
Current chains
- Chain f
- 16S ribosomal rRNA
Nearby chains
- Chain 0
- 30S ribosomal protein S20
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
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