IL_7D6Z_188
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAAA*UGCC
- Length
- 9 nucleotides
- Bulged bases
- 7D6Z|1|f|A|130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D6Z_188 not in the Motif Atlas
- Geometric match to IL_1GID_008
- Geometric discrepancy: 0.2351
- The information below is about IL_1GID_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
7D6Z|1|f|G|127
7D6Z|1|f|G|128
7D6Z|1|f|A|129
7D6Z|1|f|A|130
7D6Z|1|f|A|131
*
7D6Z|1|f|U|231
7D6Z|1|f|G|232
7D6Z|1|f|C|233
7D6Z|1|f|C|234
Current chains
- Chain f
- 16S ribosomal rRNA
Nearby chains
- Chain 0
- 30S ribosomal protein S20
- Chain w
- 30S ribosomal protein S16
- Chain x
- 30S ribosomal protein S17
Coloring options: