IL_7D80_015

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7D80|1|A|G|801, 7D80|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_015 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1677

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7D80|1|A|G|674
7D80|1|A|A|675
7D80|1|A|A|676
7D80|1|A|A|677
7D80|1|A|C|678
*
7D80|1|A|G|799
7D80|1|A|A|800
7D80|1|A|G|801
7D80|1|A|A|802
7D80|1|A|U|803
7D80|1|A|A|804
7D80|1|A|G|805
7D80|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain k

50S ribosomal protein L15