IL_7D80_033

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAUG*CGCG

Length

9 nucleotides

Bulged bases

7D80|1|A|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_033 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.3251

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7D80|1|A|C|1030
7D80|1|A|G|1031
7D80|1|A|A|1032
7D80|1|A|U|1033
7D80|1|A|G|1034
*
7D80|1|A|C|1121
7D80|1|A|G|1122
7D80|1|A|C|1123
7D80|1|A|G|1124

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain a

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16