IL_7D80_047

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

7D80|1|A|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_047 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.1365

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7D80|1|A|C|1437
7D80|1|A|U|1438
7D80|1|A|A|1439
7D80|1|A|U|1440
*
7D80|1|A|A|1551
7D80|1|A|A|1552
7D80|1|A|A|1553
7D80|1|A|U|1554
7D80|1|A|G|1555

Current chains

Chain A

23S ribosomal RNA

Nearby chains