IL_7D80_053

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_053 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3222

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7D80|1|A|C|1526
7D80|1|A|G|1527
7D80|1|A|A|1528
7D80|1|A|G|1529
7D80|1|A|G|1530
*
7D80|1|A|C|1541
7D80|1|A|U|1542
7D80|1|A|G|1543
7D80|1|A|A|1544
7D80|1|A|A|1545
7D80|1|A|G|1546

Current chains

Chain A

23S ribosomal RNA

Nearby chains