IL_7D80_056

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_056 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.1835

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7D80|1|A|G|1666
7D80|1|A|G|1667
7D80|1|A|A|1668
7D80|1|A|A|1669
7D80|1|A|C|1670
7D80|1|A|U|1671
7D80|1|A|A|1672
7D80|1|A|G|1673
7D80|1|A|G|1674
*
7D80|1|A|C|1990
7D80|1|A|U|1991
7D80|1|A|G|1992
7D80|1|A|U|1993
7D80|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L14