IL_7D80_059

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_059 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2493

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

7D80|1|A|U|1720
7D80|1|A|G|1721
7D80|1|A|A|1722
7D80|1|A|G|1723
7D80|1|A|G|1724
7D80|1|A|U|1725
*
7D80|1|A|A|1735
7D80|1|A|U|1736
7D80|1|A|G|1737
7D80|1|A|G|1738
7D80|1|A|A|1739
7D80|1|A|G|1740

Current chains

Chain A

23S ribosomal RNA

Nearby chains