IL_7D80_073

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AGCCU*AUGUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_073 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3452

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7D80|1|A|A|2101
7D80|1|A|G|2102
7D80|1|A|C|2103
7D80|1|A|C|2104
7D80|1|A|U|2105
*
7D80|1|A|A|2184
7D80|1|A|U|2185
7D80|1|A|G|2186
7D80|1|A|U|2187
7D80|1|A|U|2188

Current chains

Chain A

23S ribosomal RNA

Nearby chains