IL_7D80_087

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_087 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1141

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7D80|1|A|C|2652
7D80|1|A|U|2653
7D80|1|A|A|2654
7D80|1|A|G|2655
7D80|1|A|U|2656
7D80|1|A|A|2657
7D80|1|A|C|2658
*
7D80|1|A|G|2663
7D80|1|A|G|2664
7D80|1|A|A|2665
7D80|1|A|C|2666
7D80|1|A|C|2667
7D80|1|A|G|2668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L6