IL_7D80_106

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGGG*CUGA

Length

8 nucleotides

Bulged bases

7D80|1|B|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_106 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3622

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7D80|1|B|U|375
7D80|1|B|G|376
7D80|1|B|G|377
7D80|1|B|G|378
*
7D80|1|B|C|386
7D80|1|B|U|387
7D80|1|B|G|388
7D80|1|B|A|389

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S16