IL_7D80_155
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7D80_155 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.1188
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7D80|1|a|C|71
7D80|1|a|G|72
7D80|1|a|A|73
7D80|1|a|U|74
7D80|1|a|G|75
7D80|1|a|G|76
7D80|1|a|U|77
7D80|1|a|A|78
7D80|1|a|G|79
*
7D80|1|a|C|97
7D80|1|a|G|98
7D80|1|a|A|99
7D80|1|a|G|100
7D80|1|a|A|101
7D80|1|a|G|102
7D80|1|a|U|103
7D80|1|a|A|104
7D80|1|a|G|105
Current chains
- Chain a
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
- Chain t
- 50S ribosomal protein L25
- Chain x
- 50S ribosomal protein L30
Coloring options: