IL_7D80_224

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_224 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1156

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7D80|1|A|U|1851
7D80|1|A|U|1852
7D80|1|A|A|1853
7D80|1|A|A|1854
7D80|1|A|U|1855
7D80|1|A|U|1856
7D80|1|A|G|1857
7D80|1|A|A|1858
7D80|1|A|U|1859
7D80|1|A|G|1860
*
7D80|1|A|U|1882
7D80|1|A|U|1883
7D80|1|A|G|1884
7D80|1|A|A|1885
7D80|1|A|U|1886
7D80|1|A|C|1887
7D80|1|A|G|1888
7D80|1|A|A|1889
7D80|1|A|A|1890
7D80|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

Transfer RNA; tRNA