IL_7D80_236

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D80_236 not in the Motif Atlas

Geometric match to IL_7ECN_002

Geometric discrepancy: 0.2397

The information below is about IL_7ECN_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7D80|1|B|G|836
7D80|1|B|U|837
7D80|1|B|G|838
*
7D80|1|B|C|848
7D80|1|B|G|849
7D80|1|B|U|850

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S2

Chain S

30S ribosomal protein S18