IL_7DCO_009

3D structure

PDB id

7DCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the activated spliceosome (Bact complex) at an atomic resolution of 2.5 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DCO_009 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.3271

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

7DCO|1|G|C|491
7DCO|1|G|U|492
7DCO|1|G|A|493
*
7DCO|1|H|U|42
7DCO|1|H|G|43

Current chains

Chain G

pre-mRNA

Chain H

U2 snRNA

Nearby chains

Chain 1

HSH155 isoform 1

Chain v

PRP11 isoform 1