IL_7DUJ_021
3D structure
- PDB id
- 7DUJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7DUJ|1|A|A|532, 7DUJ|1|A|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7DUJ_021 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.3381
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7DUJ|1|A|G|515
7DUJ|1|A|PSU|516
7DUJ|1|A|G|517
7DUJ|1|A|C|518
7DUJ|1|A|C|519
7DUJ|1|A|A|520
7DUJ|1|A|G|521
*
7DUJ|1|A|C|528
7DUJ|1|A|G|529
7DUJ|1|A|G|530
7DUJ|1|A|U|531
7DUJ|1|A|A|532
7DUJ|1|A|A|533
7DUJ|1|A|U|534
7DUJ|1|A|A|535
7DUJ|1|A|C|536
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
- Chain W
- RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')
- Chain Y
- RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')
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