IL_7DUL_051

3D structure

PDB id

7DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUL_051 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1036

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7DUL|1|A|C|1303
7DUL|1|A|G|1304
7DUL|1|A|G|1305
7DUL|1|A|A|1306
7DUL|1|A|U|1307
7DUL|1|A|U|1308
*
7DUL|1|A|A|1329
7DUL|1|A|U|1330
7DUL|1|A|G|1331
7DUL|1|A|A|1332
7DUL|1|A|A|1333
7DUL|1|A|G|1334

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19

Chain U

30S ribosomal protein Thx