IL_7F0D_027

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_027 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.1339

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7F0D|1|A|U|832
7F0D|1|A|G|833
7F0D|1|A|A|834
7F0D|1|A|A|835
7F0D|1|A|G|836
*
7F0D|1|A|U|853
7F0D|1|A|G|854
7F0D|1|A|G|855
7F0D|1|A|A|856
7F0D|1|A|G|857

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2