IL_7F0D_029
3D structure
- PDB id
- 7F0D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 7F0D|1|A|G|905, 7F0D|1|A|A|917, 7F0D|1|A|A|918, 7F0D|1|A|U|919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7F0D_029 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.1287
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7F0D|1|A|G|904
7F0D|1|A|G|905
7F0D|1|A|G|906
*
7F0D|1|A|C|916
7F0D|1|A|A|917
7F0D|1|A|A|918
7F0D|1|A|U|919
7F0D|1|A|C|920
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L22
Coloring options: