IL_7F0D_032

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUC*GUAAA

Length

8 nucleotides

Bulged bases

7F0D|1|A|A|1059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_032 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.3166

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7F0D|1|A|U|976
7F0D|1|A|U|977
7F0D|1|A|C|978
*
7F0D|1|A|G|1057
7F0D|1|A|U|1058
7F0D|1|A|A|1059
7F0D|1|A|A|1060
7F0D|1|A|A|1061

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L30