IL_7F0D_033
3D structure
- PDB id
- 7F0D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7F0D_033 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.1142
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7F0D|1|A|G|985
7F0D|1|A|A|986
7F0D|1|A|G|987
7F0D|1|A|G|988
7F0D|1|A|U|989
7F0D|1|A|A|990
7F0D|1|A|G|991
*
7F0D|1|A|C|1044
7F0D|1|A|G|1045
7F0D|1|A|A|1046
7F0D|1|A|A|1047
7F0D|1|A|U|1048
7F0D|1|A|G|1049
7F0D|1|A|C|1050
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L30
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