IL_7F0D_043

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

7F0D|1|A|C|1271, 7F0D|1|A|A|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_043 not in the Motif Atlas

Geometric match to IL_4V9F_040

Geometric discrepancy: 0.1259

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

7F0D|1|A|C|1147
7F0D|1|A|U|1148
7F0D|1|A|A|1149
7F0D|1|A|A|1150
7F0D|1|A|G|1151
7F0D|1|A|U|1152
7F0D|1|A|G|1153
*
7F0D|1|A|C|1269
7F0D|1|A|U|1270
7F0D|1|A|C|1271
7F0D|1|A|A|1272
7F0D|1|A|A|1273
7F0D|1|A|G|1274

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13