IL_7F0D_046
3D structure
- PDB id
- 7F0D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAAGACAA*UCAAG
- Length
- 14 nucleotides
- Bulged bases
- 7F0D|1|A|A|1174, 7F0D|1|A|A|1175
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7F0D_046 not in the Motif Atlas
- Geometric match to IL_5J7L_284
- Geometric discrepancy: 0.3906
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
7F0D|1|A|C|1172
7F0D|1|A|A|1173
7F0D|1|A|A|1174
7F0D|1|A|A|1175
7F0D|1|A|G|1176
7F0D|1|A|A|1177
7F0D|1|A|C|1178
7F0D|1|A|A|1179
7F0D|1|A|A|1180
*
7F0D|1|A|U|1237
7F0D|1|A|C|1238
7F0D|1|A|A|1239
7F0D|1|A|A|1240
7F0D|1|A|G|1241
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
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