IL_7F0D_051

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

7F0D|1|A|C|1452, 7F0D|1|A|G|1463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_051 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.2993

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

7F0D|1|A|G|1450
7F0D|1|A|C|1451
7F0D|1|A|C|1452
7F0D|1|A|A|1453
7F0D|1|A|G|1454
*
7F0D|1|A|C|1462
7F0D|1|A|G|1463
7F0D|1|A|C|1464

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain T

50S ribosomal protein L23