IL_7F0D_068

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*UGACG

Length

9 nucleotides

Bulged bases

7F0D|1|A|C|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_068 not in the Motif Atlas

Geometric match to IL_5J7L_299

Geometric discrepancy: 0.1885

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7F0D|1|A|C|1706
7F0D|1|A|A|1707
7F0D|1|A|A|1708
7F0D|1|A|G|1709
*
7F0D|1|A|U|1759
7F0D|1|A|G|1760
7F0D|1|A|A|1761
7F0D|1|A|C|1762
7F0D|1|A|G|1763

Current chains

Chain A

23S rRNA

Nearby chains