IL_7F0D_073

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUAAC*GAC

Length

9 nucleotides

Bulged bases

7F0D|1|A|U|1888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_073 not in the Motif Atlas

Homologous match to IL_8VTW_063

Geometric discrepancy: 0.5391

The information below is about IL_8VTW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.3

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7F0D|1|A|G|1886
7F0D|1|A|A|1887
7F0D|1|A|U|1888
7F0D|1|A|A|1889
7F0D|1|A|A|1890
7F0D|1|A|C|1891
*
7F0D|1|A|G|2242
7F0D|1|A|A|2243
7F0D|1|A|C|2244

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17