IL_7F0D_078

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUAUC*GGAU

Length

10 nucleotides

Bulged bases

7F0D|1|A|U|1949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_078 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.376

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_45860.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7F0D|1|A|A|1947
7F0D|1|A|A|1948
7F0D|1|A|U|1949
7F0D|1|A|A|1950
7F0D|1|A|U|1951
7F0D|1|A|C|1952
*
7F0D|1|A|G|1977
7F0D|1|A|G|1978
7F0D|1|A|A|1979
7F0D|1|A|U|1980

Current chains

Chain A

23S rRNA

Nearby chains