IL_7F0D_103

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_103 not in the Motif Atlas

Geometric match to IL_5B2P_001

Geometric discrepancy: 0.1339

The information below is about IL_5B2P_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7F0D|1|A|C|2699
7F0D|1|A|U|2700
7F0D|1|A|U|2701
*
7F0D|1|A|A|2725
7F0D|1|A|U|2726
7F0D|1|A|G|2727

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16