IL_7F0D_110

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGAG*CAAGAUCAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_110 not in the Motif Atlas

Geometric match to IL_7RQB_102

Geometric discrepancy: 0.1192

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7F0D|1|A|U|2874
7F0D|1|A|U|2875
7F0D|1|A|G|2876
7F0D|1|A|A|2877
7F0D|1|A|G|2878
*
7F0D|1|A|C|3012
7F0D|1|A|A|3013
7F0D|1|A|A|3014
7F0D|1|A|G|3015
7F0D|1|A|A|3016
7F0D|1|A|U|3017
7F0D|1|A|C|3018
7F0D|1|A|A|3019
7F0D|1|A|G|3020

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13