IL_7F0D_113

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAC*GAUAG

Length

10 nucleotides

Bulged bases

7F0D|1|A|C|2927, 7F0D|1|A|A|2928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_113 not in the Motif Atlas

Geometric match to IL_4WF9_102

Geometric discrepancy: 0.1993

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

7F0D|1|A|U|2925
7F0D|1|A|G|2926
7F0D|1|A|C|2927
7F0D|1|A|A|2928
7F0D|1|A|C|2929
*
7F0D|1|A|G|2956
7F0D|1|A|A|2957
7F0D|1|A|U|2958
7F0D|1|A|A|2959
7F0D|1|A|G|2960

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19