IL_7F0D_116

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

7F0D|1|A|G|3114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_116 not in the Motif Atlas

Geometric match to IL_1U9S_006

Geometric discrepancy: 0.1901

The information below is about IL_1U9S_006

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

7F0D|1|A|G|3073
7F0D|1|A|G|3074
*
7F0D|1|A|U|3113
7F0D|1|A|G|3114
7F0D|1|A|C|3115

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17