IL_7F0D_128

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAG*UGAUC

Length

9 nucleotides

Bulged bases

7F0D|1|A|U|1791

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F0D_128 not in the Motif Atlas

Homologous match to IL_9DFE_056

Geometric discrepancy: 0.2842

The information below is about IL_9DFE_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7F0D|1|A|G|1675
7F0D|1|A|U|1676
7F0D|1|A|A|1677
7F0D|1|A|G|1678
*
7F0D|1|A|U|1788
7F0D|1|A|G|1789
7F0D|1|A|A|1790
7F0D|1|A|U|1791
7F0D|1|A|C|1792

Current chains

Chain A

23S rRNA

Nearby chains